Publication

Potential Use of CRISPR/Cas13 Machinery in Understanding Virus–Host Interaction
Bayoumi, M., Munir, M. 26/11/2021 In: Frontiers in Microbiology. 12, 13 p.

Structural and Evolutionary Insights Into the Binding of Host Receptors by the Rabies Virus Glycoprotein
Khalifa, M., Unterholzner, L., Munir, M. 11/10/2021 In: Frontiers in cellular and infection microbiology. 11, 13 p.

Immunogenicity and Protective Efficacy of an Intranasal Live-attenuated Vaccine Against SARS-CoV-2
Park, J., Oladunni, F.S., Rohaim, M.A., Whittingham-Dowd, J., Tollitt, J., Hodges, M.D., Fathallah, N., Assas, M.B., Alhazmi, W., Almilaibary, A., Iqbal, M., Chang, P., Escalona, R., Shivanna, V., Torrelles, J.B., Worthington, J.J., Jackson-Jones, L.H., Martinez-Sobrido, L., Munir, M. 30/09/2021 In: iScience. 24, 9

Oncolytic effect of Newcastle disease virus is attributed to interferon regulation in canine mammary cancer cell lines
Santos, M.R., Xavier, P.L.P., Pires, P.R.L., Rochetti, A.L., Rosim, D.F., Scagion, G.P., Zuccari, D.A.P.C., Munir, M., Ferreira, H.L., Fukumasu, H. 30/09/2021 In: Veterinary and Comparative Oncology. 19, 3, p. 593-601. 9 p.

Insights into the genetic evolution of duck hepatitis a virus in Egypt
Rohaim, M., El Naggar, R., Abdelsabour, M., Ahmed, B., Hamoud, M., Ahmed, K., Zahran, O., Munir, M. 19/09/2021 In: Animals. 11, 9, 16 p.

Immunogenicity and efficacy of a bivalent vaccine against infectious bronchitis virus
Abdel-Sabour, M., Rohaim, M., Salman, O., Abodalal, S., Mohammad, F., Madkour, M., Abdel-Wanis, N., Munir, M. 31/08/2021 In: Comparative Immunology, Microbiology and Infectious Diseases. 77, 6 p.

An artificial intelligence-assisted portable low-cost device for the rapid detection of sars-cov-2
Tharmakulasingam, M., Chaudhry, N., Fernando, A., Branavan, M., Balachandran, W., Poirier, A., Rohaim, M., Munir, M., La Ragione, R. 26/08/2021 In: Electronics (Switzerland). 10, 17, 13 p.

Transgenic chicks expressing interferon-inducible transmembrane protein 1 (Ifitm1) restrict highly pathogenic h5n1 influenza viruses
Rohaim, M., Al-Natour, M., Abdelsabour, M., El Naggar, R., Madbouly, Y., Ahmed, K., Munir, M. 6/08/2021 In: International Journal of Molecular Sciences. 22, 16, 13 p.

On-demand cold plasma activation of acetyl donors for bacteria and virus decontamination
Szili, E., Ghimire, B., Patenall, B., Rohaim, M., Mistry, D., Fellows, A., Munir, M., Jenkins, A., Short, R. 2/08/2021 In: Applied Physics Letters. 119, 5, 5 p.

Evolutionary conservation of the DRACH signatures of potential N6-methyladenosine (m6A) sites among influenza A viruses
Bayoumi, M., Munir, M. 25/02/2021 In: Scientific Reports. 11, 1, 12 p.

Comparative infectivity and transmissibility studies of wild-bird and chicken-origin highly pathogenic avian influenza viruses H5N8 in chickens
Rohaim, M., El Naggar, R., Madbouly, Y., AbdelSabour, M., Ahmed, K., Munir, M. 1/02/2021 In: Comparative Immunology, Microbiology and Infectious Diseases. 74, 9 p.

Structural Insights Into m6A-Erasers: A Step Toward Understanding Molecule Specificity and Potential Antiviral Targeting
Bayoumi, M., Munir, M. 21/01/2021 In: Frontiers in cell and developmental biology. 8, 14 p.

Structural and functional insights into non-structural proteins of coronaviruses
Rohaim, M., El Naggar, R., Clayton, E., Munir, M. 1/01/2021 In: Microbial pathogenesis. 150, 12 p.

Fundamental Characteristics of Bat Interferon Systems
Clayton, E., Munir, M. 11/12/2020 In: Frontiers in cellular and infection microbiology. 10, 14 p.

Potential reverse spillover of infectious bursal disease virus at the interface of commercial poultry and wild birds
Naggar, R., Rohaim, M., Munir, M. 24/09/2020 In: Virus Genes. 56, p. 705–711. 7 p.

Artificial Intelligence-Assisted Loop Mediated Isothermal Amplification (ai-LAMP) for Rapid Detection of SARS-CoV-2
Rohaim, M., Clayton, E., Sahin, I., Vilela, J., Khalifa, M., Al-Natour, M., Bayoumi, M., Poirier, A.C., Branavan, M., Tharmakulasingam, M., Choudhry, M.S., Sodi, R., Brown, A., Burkhart, P., Hacking, W., Botham, J., Boyce, J., Wilkinson, H., Williams, C., Whittingham-Dowd, J., Shaw, E., Hodges, M., Butler, L., Bates, M., La Ragione, R., Balachandran, W., Fernando, A., Munir, M. 1/09/2020 In: Viruses. 12, 9, 19 p.

A Scalable Topical Vectored Vaccine Candidate Against SARS-CoV-2
Rohaim, M.A., Munir, M. 24/08/2020 In: Vaccines. 8, 3, 16 p.

Structural and Virus Regulatory Insights Into Avian N6-Methyladenosine (m6A) Machinery
Bayoumi, M., Rohaim, M.A., Munir, M. 15/07/2020 In: Frontiers in cell and developmental biology. 8, 14 p.

Evolutionary analysis of infectious bronchitis virus reveals marked genetic diversity and recombination events
Rohaim, M., El Naggar, R., Abdelsabour, M., Mohamed, M., El-Sabagh, I., Munir, M. 29/05/2020 In: Genes. 11, 6, 14 p.

MERTK is a host factor that promotes classical swine fever virus entry and antagonizes innate immune response in PK-15 cells
Zheng, G., Li, L., Zhang, Y., Qu, L., Wang, W., Li, M., Yu, S., Zhou, M., Luo, Y., Sun, Y., Munir, M., Li, S., Qiu, H. 1/05/2020 In: Emerging Microbes and Infections. 9, 1, p. 571-581. 11 p.

Duckling short beak and dwarfism syndrome virus infection activates host innate immune response involving both DNA and RNA sensors
Chen, S., Fang, T., Xiao, S., Lin, F., Cheng, X., Wang, S., Zhu, X., Chen, X., Zheng, M., Munir, M., Huang, M., Yu, F. 31/01/2020 In: Microbial pathogenesis. 138, 10 p.

A comprehensive global perspective on phylogenomics and evolutionary dynamics of Small ruminant morbillivirus
Shabbir, M., Rahman, A., Munir, M. 8/01/2020 In: Scientific Reports. 10, 1, 17 p.

Application of CRISPR/Cas9 in Understanding Avian Viruses and Developing Poultry Vaccines
Vilela, J., Rohaim, M.A., Munir, M. 24/11/2020

Simultaneous Deletion of Virulence Factors and Insertion of Antigens into the Infectious Laryngotracheitis Virus Using NHEJ-CRISPR/Cas9 and Cre–Lox System for Construction of a Stable Vaccine Vector
Atasoy, M., Rohaim, M., Munir, M. 5/12/2019 In: Vaccines. 7, 4, 15 p.

Evaluation of transmission potential and pathobiological characteristics of mallard originated Avian orthoavulavirus 1 (sub-genotype VII.2) in commercial broilers
Habib, M., Yaqub, T., Sohail, T., Shahbaz, M., Shehzad, W., Munir, M., Shabbir, M.Z. 1/12/2019 In: Microbial pathogenesis. 137, 5 p.

A comparative genomic and evolutionary analysis of circulating strains of Avian avulavirus 1 in Pakistan
Rahman, A., Munir, M., Shabbir, M.Z. 30/10/2019 In: Molecular Genetics and Genomics. 294, 5, p. 1289–1309. 21 p.

Genome-wide classification of type I, type II and type III interferon-stimulated genes in chicken fibroblasts
Santhakumar, D., Rohaim, M., Munir, M. 25/10/2019 In: Vaccines. 7, 4, 17 p.

A comparative phylogenomic analysis of peste des petits ruminants virus isolated from wild and unusual hosts
Rahman, A., Munir, M., Shabbir, M.Z. 1/10/2019 In: Molecular Biology Reports. 46, 5, p. 5587-5593. 7 p.

Emergence and genetic analysis of variant pathogenic 4/91 (serotype 793/B) infectious bronchitis virus in Egypt during 2019
Rohaim, M.A., El Naggar, R.F., Hamoud, M.M., Bazid, A.I., Gamal, A.M., Laban, S.E., Abdel-Sabour, M.A., Nasr, S.A.E., Zaki, M.M., Shabbir, M.Z., Zahran, O.K., Munir, M. 1/10/2019 In: Virus Genes. 55, 5, p. 720-725. 6 p.

Updated unified phylogenetic classification system and revised nomenclature for Newcastle disease virus
Dimitrov, K.M., Abolnik, C., Afonso, C.L., Albina, E., Bahl, J., Berg, M., Briand, F., Brown, I.H., Choi, K., Chvala, I., Diel, D.G., Durr, P.A., Ferreira, H.L., Fusaro, A., Gil, P., Goujgoulova, G.V., Grund, C., Hicks, J.T., Joannis, T.M., Kim Torchetti, M., Kolosov, S., Lambrecht, B., Lewis, N.S., Liu, H., Liu, H., McCullough, S., Miller, P.J., Monne, I., Muller, C.P., Munir, M., Reischak, D., Sabra, M., Samal, S.K., Servan de Almeida, R., Shittu, I., Snoeck, C.J., Suarez, D.L., Van Borm, S., Wang, Z., Wong, F.Y.K. 1/10/2019 In: Infection, Genetics and Evolution. 74, 15 p.

Co-infection of Newcastle disease virus genotype XIII with low pathogenic avian influenza exacerbates clinical outcome of Newcastle disease in vaccinated layer poultry flocks
Gowthaman, V., Singh, S., Dhama, K., Ramakrishnan, M., Malik, Y., Gopala Krishna Murthy, T., Chitra, R., Munir, M. 1/09/2019 In: Virusdisease. 30, 3, p. 441–452. 12 p.

Human Hemoglobin Subunit Beta Functions as a Pleiotropic Regulator of RIG-I/MDA5-Mediated Antiviral Innate Immune Responses
Yang, Q., Bai, S., Li, L., Li, S., Zhang, Y., Munir, M., Qiu, H. 30/07/2019 In: Journal of Virology. 93, 16, 21 p.

Sequence analysis and biological characterization of virulent Avian avulavirus 1 isolated from asymptomatic migratory fowl
Ul-Rahman, A., Yaqub, T., Imran, M., Habib, M., Sohail, T., Mukhtar, N., Shahid, M.F., Munir, M., Shabbir, M.Z. 3/05/2019 In: Acta virologica. 63, 2, p. 223-228. 6 p.

Dynamic expression of interferon lambda regulated genes in primary fibroblasts and immune organs of the chicken
Arslan, M., Yang, X., Santhakumar, D., Liu, X., Hu, X., Munir, M., Li, Y., Zhang, Z. 14/02/2019 In: Virus Genes. 10, 2, 14 p.

Genetic diversity and phylodynamics of avian coronaviruses in Egyptian wild birds
Rohaim, M., El Naggar, R., Helal, A., Bayoumi, M., El-Saied, M., Ahmed, K., Shabbir, M., Munir, M. 14/01/2019 In: Viruses. 11, 1, 16 p.

Pathogenic Characterization and Full Length Genome Sequence of a Reassortant Infectious Bursal Disease Virus Newly Isolated in Pakistan
Hussain, A., Wu, T., Li, H., Fan, L., Li, K., Gao, L., Wang, Y., Gao, Y., Liu, C., Cui, H., Pan, Q., Zhang, Y., Aslam, A., Muti-Ur-Rehman, K., Munir, M., Butt, S., Wang, X., Qi, X. 28/02/2019 In: Virologica Sinica. 34, 1, 4 p.

Oxidative Stress in Poultry: Lessons from the Viral Infections
Rehman, Z.U., Meng, C., Sun, Y., Safdar, A., Pasha, R.H., Munir, M., Ding, C. 10/12/2018 In: Oxidative Medicine and Cellular Longevity. 2018, 14 p.

Genetic characterization of small ruminant morbillivirus from recently emerging wave of outbreaks in Pakistan
Shabbir, M.Z., Ul-Rahman, A., Zahid, M.N., Munir, M. 6/12/2018 In: Transboundary and Emerging Diseases. 65, 6, p. 2032-2038. 7 p.

Phylogenomics and Infectious Potential of Avian Avulaviruses Species-Type 1 Isolated from Healthy Green-Winged Teal (Anas carolinensis) from a Wetland Sanctuary of Indus River
[No Value], A., Yaqub, T., Imran, M., Habib, M., Sohail, T., Shahid, M., Munir, M., Shabbir, M. 2/12/2018 In: Avian Diseases. 62, 4, p. 404-415. 12 p.

Potential of genotype VII Newcastle disease viruses to cause differential infections in chickens and ducks
Meng, C., Rehman, Z.U., Liu, K., Qiu, X., Tan, L., Sun, Y., Liao, Y., Song, C., Yu, S., Ding, Z., Nair, V., Munir, M., Ding, C. 12/2018 In: Transboundary and Emerging Diseases. 65, 6, p. 1851-1862. 12 p.

Production, characterization, and epitope mapping of a monoclonal antibody against genotype VII Newcastle disease virus V protein
Li, J., Meng, C., Ren, T., Wang, W., Zhang, Y., Yuan, W., Xu, S., Sun, Y., Tan, L., Song, C., Liao, Y., Nair, V., Munir, M., Ding, Z., Liu, X., Qiu, X., Ding, C. 1/10/2018 In: Journal of Virological Methods. 260, p. 88-97. 10 p.

Biological characterization of wild-bird-origin avian avulavirus 1 and efficacy of currently applied vaccines against potential infection in commercial poultry
El Naggar, R.F., Rohaim, M.A., Bazid, A.H., Ahmed, K.A., Hussein, H.A., Munir, M. 10/2018 In: Archives of Virology. 163, 10, p. 2743-2755. 13 p.

Comparative evolutionary and phylogenomic analysis of Avian avulaviruses 1 to 20
ul-Rahman, A., Munir, M., Zubair Shabbir, M. 10/2018 In: Molecular Phylogenetics and Evolution. 127, p. 931-951. 21 p.

Chickens Expressing IFIT5 Ameliorate Clinical Outcome and Pathology of Highly Pathogenic Avian Influenza and Velogenic Newcastle Disease Viruses
Rohaim, M.A., Santhakumar, D., Naggar, R.F.E., Iqbal, M., Hussein, H.A., Munir, M. 14/09/2018 In: Frontiers in Immunology. 9, 14 p.

Meeting report: Global alliance for research on avian diseases 2018, International Conference, January 17 to 19, 2018, Hanoi, Vietnam
Iqbal, M., Lukosaityte, D., Munir, M., Nair, V. 10/09/2018 In: Avian Diseases. 63, Suppl.1, p. 251-257. 7 p.

Genomic and biological characterization of Newcastle disease viruses isolated from migratory mallards (Anas platyrhynchos)
Habib, M., Yaqub, T., Nazir, J., Shehzad, W., Sohail, T., Mukhtar, N., Mehboob, A., Munir, M., Shabbir, M.Z. 08/2018 In: Archives of Virology. 163, 8, p. 2179-2188. 10 p.

Supplementation of Vitamin E Protects Chickens from Newcastle Disease Virus-Mediated Exacerbation of Intestinal Oxidative Stress and Tissue Damage
Rehman, Z.U., Che, L., Ren, S., Liao, Y., Qiu, X., Yu, S., Sun, Y., Tan, L., Song, C., Liu, W., Ding, Z., Munir, M., Nair, V., Meng, C., Ding, C. 27/06/2018 In: Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology. 47, 4, p. 1655-1666. 12 p.

The E2 glycoprotein is necessary but not sufficient for the adaptation of classical swine fever virus lapinized vaccine C-strain to the rabbit
Li, Y., Xie, L., Zhang, L., Wang, X., Li, C., Han, Y., Hu, S., Sun, Y., Li, S., Luo, Y., Liu, L., Munir, M., Qiu, H. 06/2018 In: Virology. 519, p. 197-206. 10 p.

RING-Domain E3 Ligase-Mediated Host–Virus Interactions: Orchestrating Immune Responses by the Host and Antagonizing Immune Defense by Viruses
Zhang, Y., Li, L., Munir, M., Qiu, H. 22/05/2018 In: Frontiers in Immunology. 9, 12 p.

Chicken Interferon-induced Protein with Tetratricopeptide Repeats 5 Antagonizes Replication of RNA Viruses
Santhakumar, D., Rohaim, M.A.M.S., Hussein, H.A., Hawes, P., Ferreira, H.L., Behboudi, S., Iqbal, M., Nair, V., Arns, C.W., Munir, M. 1/05/2018 In: Scientific Reports. 8, 1, 20 p.

NDV entry into dendritic cells through macropinocytosis and suppression of T lymphocyte proliferation
Tan, L., Zhang, Y., Qiao, C., Yuan, Y., Sun, Y., Qiu, X., Meng, C., Song, C., Liao, Y., Munir, M., Nair, V., Ding, Z., Liu, X., Ding, C. 05/2018 In: Virology. 518, p. 126-135. 10 p.

Vitamin E Supplementation Ameliorates Newcastle Disease Virus-Induced Oxidative Stress and Alleviates Tissue Damage in the Brains of Chickens
Rehman, Z.U., Qiu, X., Sun, Y., Liao, Y., Tan, L., Song, C., Yu, S., Ding, Z., Munir, M., Nair, V., Meng, C., Ding, C. 3/04/2018 In: Viruses. 10, 4, 15 p.

The Application of NHEJ-CRISPR/Cas9 and Cre-Lox System in the Generation of Bivalent Duck Enteritis Virus Vaccine against Avian Influenza Virus
Chang, P., Yao, Y., Tang, N., Sadeyen, J., Sealy, J., Clements, A., Bhat, S., Munir, M., Bryant, J.E., Iqbal, M. 13/02/2018 In: Viruses. 10, 2, 11 p.

Pathobiology of Avian avulavirus 1: special focus on waterfowl
Rehman, Z.U., Meng, C., Sun, Y., Mahrose, K.M., Umar, S., Ding, C., Munir, M. 19/09/2018

A Comprehensive Review on Equine Influenza Virus: Etiology, Epidemiology, Pathobiology, Advances in Developing Diagnostics, Vaccines, and Control Strategies
Singh, R.K., Dhama, K., Karthik, K., Khandia, R., Munjal, A., Khurana, S.K., Chakraborty, S., Malik, Y.S., Virmani, N., Singh, R., Tripathi, B.N., Munir, M., van der Kolk, J.H. 6/09/2018